Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
UCEC rs3748971 chr2:233250683 C/T 0 174 22.38 32.97 1.67 KM Plot
UCEC rs376325792 chr14:77884053 TTTTG/T 1.99E-10 173 21.3 29.5 8.32 KM Plot
UCEC rs377273852 chr22:50296281 A/T 4.04E-9 173 22.8 20.93 14.63 KM Plot
UCEC rs377312182 chr7:64193694 TAA/T 1.11E-16 167 22.57 22.9 2.4 KM Plot
UCEC rs3796542 chr4:57271109 A/G 0.00013 174 33.28 22.63 19.67 KM Plot
UCEC rs3817856 chr1:1663831 C/T 0.000112 174 19.32 27.33 29.03 KM Plot
UCEC rs3885254 chr5:77686468 G/A 6.33E-5 167 21.6 25.58 16.3 KM Plot
UCEC rs3900702 chr5:77686621 C/G 5.99E-5 169 21.55 25.3 16.3 KM Plot
UCEC rs3922654 chr5:77684726 G/A 7.53E-5 167 21.3 25.3 16.3 KM Plot
UCEC rs3922872 chr22:50297888 T/C 3.86E-9 173 22.67 23.82 14.63 KM Plot
UCEC rs392847 chr6:5114485 A/G 2.88E-12 173 5.97 27.33 22.57 KM Plot
UCEC rs4074995 chr5:176797343 C/T 2.13E-6 174 21.1 26.37 14.97 KM Plot
UCEC rs4075958 chr5:176784512 A/G 1.07E-6 174 14.8 26.9 21.08 KM Plot
UCEC rs41402649 chr14:73375535 C/G 4.8E-7 174 22.8 20.98 10.33 KM Plot
UCEC rs41451048 chr15:33458349 A/G 7.19E-9 174 4.5 21.6 22.6 KM Plot